Genomics Adventure in Durban

The Genomics Adventure module has been run many times by Guy Leonard in a workshop held in Cesky Krumlov. Now the adventure continues in Durban, SA.

Before we start, run the following command:

cd /home/genomics/workshop_materials/genomics_adventure/;
mv sequencing_data .sequencing_data_backup;
mv reference_sequences .reference_sequences_backup;
mkdir -p sequencing_data/ecoli;
mkdir -p reference_sequences/ecoli;
cp .sequencing_data_backup/ecoli/*SRR857279* sequencing_data/ecoli;
cp .reference_sequences_backup/ecoli/GCF_000005845.2_ASM584v2_genomic.fna reference_sequences/ecoli;
cp .reference_sequences_backup/ecoli/GCF_000005845.2_ASM584v2_genomic.gff reference_sequences/ecoli;

Now follow the adventure here:

https://github.com/guyleonard/genomics_adventure/blob/release/README.md#a-few-notes-on-styles

to download your fastqc results

# replace <your-ip-address> with the correct IP address
scp genomics@<your-ip-address>:`/home/genomics/workshop_materials/genomics_adventure/sequencing_data/ecoli/*.html` ./